| Package | hl7.fhir.uv.xver |
| Type | StructureMap |
| Id | Id |
| FHIR Version | R5 |
| Source | http://hl7.org/fhir/extensions/https://build.fhir.org/ig/HL7/fhir-cross-version/StructureMap-Sequence4to3.html |
| Url | http://hl7.org/fhir/StructureMap/Sequence4to3 Transforms: R4 to R3 |
| Version | 0.1.0 |
| Status | active |
| Date | 2024-02-22T03:16:50+00:00 |
| Name | Sequence4to3 |
| Title | R4 to R3 Conversion for Sequence |
| Experimental | False |
| Realm | uv |
| Authority | hl7 |
| Description | R4toR3ConversionforSequence |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
/// url = 'http://hl7.org/fhir/StructureMap/Sequence4to3 Transforms: R4 to R3' /// name = 'Sequence4to3' /// title = 'R4 to R3 Conversion for Sequence' /// status = 'active' uses "http://hl7.org/fhir/4.0/MolecularSequence" alias Sequence as source uses "http://hl7.org/fhir/3.0/Sequence" alias SequenceR3 as target imports "http://hl7.org/fhir/StructureMap/*4to3" group Sequence(source src : MolecularSequence, target tgt : SequenceR3) extends DomainResource <<type+>> { src.identifier -> tgt.identifier; src.type -> tgt.type; src.coordinateSystem -> tgt.coordinateSystem; src.patient -> tgt.patient; src.specimen -> tgt.specimen; src.device -> tgt.device; src.performer -> tgt.performer; src.quantity -> tgt.quantity; src.referenceSeq as vs0 -> tgt.referenceSeq as vt0 then referenceSeq(vs0, vt0); src.variant as vs0 -> tgt.variant as vt0 then variant(vs0, vt0); src.observedSeq -> tgt.observedSeq; src.quality as vs0 -> tgt.quality as vt0 then quality(vs0, vt0); src.readCoverage -> tgt.readCoverage; src.repository as vs0 -> tgt.repository as vt0 then repository(vs0, vt0); src.pointer -> tgt.pointer; } group referenceSeq(source src, target tgt) extends BackboneElement { src.chromosome -> tgt.chromosome; src.genomeBuild -> tgt.genomeBuild; src.referenceSeqId -> tgt.referenceSeqId; src.referenceSeqPointer -> tgt.referenceSeqPointer; src.referenceSeqString -> tgt.referenceSeqString; src.strand where value = 'watson' -> tgt.strand = '1'; src.strand as vvv where value = 'crick' -> tgt.strand = create('') as vvv "1"; src.windowStart -> tgt.windowStart; src.windowEnd -> tgt.windowEnd; } group variant(source src, target tgt) extends BackboneElement { src.start -> tgt.start; src.end -> tgt.end; src.observedAllele -> tgt.observedAllele; src.referenceAllele -> tgt.referenceAllele; src.cigar -> tgt.cigar; src.variantPointer -> tgt.variantPointer; } group quality(source src, target tgt) extends BackboneElement { src.type -> tgt.type; src.standardSequence -> tgt.standardSequence; src.start -> tgt.start; src.end -> tgt.end; src.score -> tgt.score; src.method -> tgt.method; src.truthTP -> tgt.truthTP; src.queryTP -> tgt.queryTP; src.truthFN -> tgt.truthFN; src.queryFP -> tgt.queryFP; src.gtFP -> tgt.gtFP; src.precision -> tgt.precision; src.recall -> tgt.recall; src.fScore -> tgt.fScore; } group repository(source src, target tgt) extends BackboneElement { src.type -> tgt.type; src.url -> tgt.url; src.name -> tgt.name; src.datasetId -> tgt.datasetId; src.variantsetId -> tgt.variantsetId; src.readsetId -> tgt.readsetId; }
FHIR{
"resourceType" : "StructureMap",
"id" : "Sequence4to3",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/StructureMap/Sequence4to3 Transforms: R4 to R3'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'Sequence4to3'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'R4 to R3 Conversion for Sequence'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span>http://hl7.org/fhir/4.0/MolecularSequence<span style=\"color: navy\">" </span><b>alias </b>Sequence <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span>http://hl7.org/fhir/3.0/Sequence<span style=\"color: navy\">" </span><b>alias </b>SequenceR3 <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> "</span>http://hl7.org/fhir/StructureMap/*4to3<span style=\"color: navy\">"\r\n</span>\r\n<b>group </b>Sequence<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>MolecularSequence, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>SequenceR3<span style=\"color: navy\">)</span><b> extends </b>DomainResource<b> <<type+>></b><span style=\"color: navy\"> {\r\n</span> src.identifier<span style=\"color: navy\"><b> -> </b></span>tgt.identifier<span style=\"color: navy\">;</span>\r\n src.type<span style=\"color: navy\"><b> -> </b></span>tgt.type<span style=\"color: navy\">;</span>\r\n src.coordinateSystem<span style=\"color: navy\"><b> -> </b></span>tgt.coordinateSystem<span style=\"color: navy\">;</span>\r\n src.patient<span style=\"color: navy\"><b> -> </b></span>tgt.patient<span style=\"color: navy\">;</span>\r\n src.specimen<span style=\"color: navy\"><b> -> </b></span>tgt.specimen<span style=\"color: navy\">;</span>\r\n src.device<span style=\"color: navy\"><b> -> </b></span>tgt.device<span style=\"color: navy\">;</span>\r\n src.performer<span style=\"color: navy\"><b> -> </b></span>tgt.performer<span style=\"color: navy\">;</span>\r\n src.quantity<span style=\"color: navy\"><b> -> </b></span>tgt.quantity<span style=\"color: navy\">;</span>\r\n src.referenceSeq<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeq<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>referenceSeq<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.variant<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -> </b></span>tgt.variant<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>variant<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.observedSeq<span style=\"color: navy\"><b> -> </b></span>tgt.observedSeq<span style=\"color: navy\">;</span>\r\n src.quality<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -> </b></span>tgt.quality<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>quality<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.readCoverage<span style=\"color: navy\"><b> -> </b></span>tgt.readCoverage<span style=\"color: navy\">;</span>\r\n src.repository<b> as </b><span style=\"color: maroon\">vs0</span><span style=\"color: navy\"><b> -> </b></span>tgt.repository<b> as </b><span style=\"color: maroon\">vt0</span><b> then </b>repository<span style=\"color: navy\">(</span><span style=\"color: maroon\">vs0</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vt0</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.pointer<span style=\"color: navy\"><b> -> </b></span>tgt.pointer<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>referenceSeq<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span> src.chromosome<span style=\"color: navy\"><b> -> </b></span>tgt.chromosome<span style=\"color: navy\">;</span>\r\n src.genomeBuild<span style=\"color: navy\"><b> -> </b></span>tgt.genomeBuild<span style=\"color: navy\">;</span>\r\n src.referenceSeqId<span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeqId<span style=\"color: navy\">;</span>\r\n src.referenceSeqPointer<span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeqPointer<span style=\"color: navy\">;</span>\r\n src.referenceSeqString<span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeqString<span style=\"color: navy\">;</span>\r\n src.strand<b> where </b>value = 'watson'<span style=\"color: navy\"><b> -> </b></span>tgt.strand = <span style=\"color: blue\">'1'</span><span style=\"color: navy\">;</span>\r\n src.strand<b> as </b><span style=\"color: maroon\">vvv</span><b> where </b>value = 'crick'<span style=\"color: navy\"><b> -> </b></span>tgt.strand = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">''</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">vvv</span> <i>"1"</i><span style=\"color: navy\">;</span>\r\n src.windowStart<span style=\"color: navy\"><b> -> </b></span>tgt.windowStart<span style=\"color: navy\">;</span>\r\n src.windowEnd<span style=\"color: navy\"><b> -> </b></span>tgt.windowEnd<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>variant<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span> src.start<span style=\"color: navy\"><b> -> </b></span>tgt.start<span style=\"color: navy\">;</span>\r\n src.end<span style=\"color: navy\"><b> -> </b></span>tgt.end<span style=\"color: navy\">;</span>\r\n src.observedAllele<span style=\"color: navy\"><b> -> </b></span>tgt.observedAllele<span style=\"color: navy\">;</span>\r\n src.referenceAllele<span style=\"color: navy\"><b> -> </b></span>tgt.referenceAllele<span style=\"color: navy\">;</span>\r\n src.cigar<span style=\"color: navy\"><b> -> </b></span>tgt.cigar<span style=\"color: navy\">;</span>\r\n src.variantPointer<span style=\"color: navy\"><b> -> </b></span>tgt.variantPointer<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>quality<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span> src.type<span style=\"color: navy\"><b> -> </b></span>tgt.type<span style=\"color: navy\">;</span>\r\n src.standardSequence<span style=\"color: navy\"><b> -> </b></span>tgt.standardSequence<span style=\"color: navy\">;</span>\r\n src.start<span style=\"color: navy\"><b> -> </b></span>tgt.start<span style=\"color: navy\">;</span>\r\n src.end<span style=\"color: navy\"><b> -> </b></span>tgt.end<span style=\"color: navy\">;</span>\r\n src.score<span style=\"color: navy\"><b> -> </b></span>tgt.score<span style=\"color: navy\">;</span>\r\n src.method<span style=\"color: navy\"><b> -> </b></span>tgt.method<span style=\"color: navy\">;</span>\r\n src.truthTP<span style=\"color: navy\"><b> -> </b></span>tgt.truthTP<span style=\"color: navy\">;</span>\r\n src.queryTP<span style=\"color: navy\"><b> -> </b></span>tgt.queryTP<span style=\"color: navy\">;</span>\r\n src.truthFN<span style=\"color: navy\"><b> -> </b></span>tgt.truthFN<span style=\"color: navy\">;</span>\r\n src.queryFP<span style=\"color: navy\"><b> -> </b></span>tgt.queryFP<span style=\"color: navy\">;</span>\r\n src.gtFP<span style=\"color: navy\"><b> -> </b></span>tgt.gtFP<span style=\"color: navy\">;</span>\r\n src.precision<span style=\"color: navy\"><b> -> </b></span>tgt.precision<span style=\"color: navy\">;</span>\r\n src.recall<span style=\"color: navy\"><b> -> </b></span>tgt.recall<span style=\"color: navy\">;</span>\r\n src.fScore<span style=\"color: navy\"><b> -> </b></span>tgt.fScore<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>repository<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span> src.type<span style=\"color: navy\"><b> -> </b></span>tgt.type<span style=\"color: navy\">;</span>\r\n src.url<span style=\"color: navy\"><b> -> </b></span>tgt.url<span style=\"color: navy\">;</span>\r\n src.name<span style=\"color: navy\"><b> -> </b></span>tgt.name<span style=\"color: navy\">;</span>\r\n src.datasetId<span style=\"color: navy\"><b> -> </b></span>tgt.datasetId<span style=\"color: navy\">;</span>\r\n src.variantsetId<span style=\"color: navy\"><b> -> </b></span>tgt.variantsetId<span style=\"color: navy\">;</span>\r\n src.readsetId<span style=\"color: navy\"><b> -> </b></span>tgt.readsetId<span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "fhir"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger" : 1,
"_valueInteger" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"
}
]
}
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode" : "draft",
"_valueCode" : {
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical" : "http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.xver"
}
]
}
}
],
"url" : "http://hl7.org/fhir/StructureMap/Sequence4to3 Transforms: R4 to R3",
"version" : "0.1.0",
"name" : "Sequence4to3",
"title" : "R4 to R3 Conversion for Sequence",
"status" : "active",
"date" : "2024-02-22T03:16:50+00:00",
"publisher" : "HL7 International / FHIR Infrastructure",
"contact" : [
{
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/fiwg"
}
]
}
],
"description" : "R4toR3ConversionforSequence",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001"
}
]
}
],
"structure" : [
{
"url" : "http://hl7.org/fhir/4.0/MolecularSequence",
"mode" : "source",
"alias" : "Sequence"
},
{
"url" : "http://hl7.org/fhir/3.0/Sequence",
"mode" : "target",
"alias" : "SequenceR3"
}
],
"import" : [
"http://hl7.org/fhir/StructureMap/*4to3"
],
"group" : [
{
"name" : "Sequence",
"extends" : "DomainResource",
"typeMode" : "type-and-types",
"input" : [
{
"name" : "src",
"type" : "MolecularSequence",
"mode" : "source"
},
{
"name" : "tgt",
"type" : "SequenceR3",
"mode" : "target"
}
],
"rule" : [
{
"name" : "identifier",
"source" : [
{
"context" : "src",
"element" : "identifier",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "identifier",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "type",
"source" : [
{
"context" : "src",
"element" : "type",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "type",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "coordinateSystem",
"source" : [
{
"context" : "src",
"element" : "coordinateSystem",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "coordinateSystem",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "patient",
"source" : [
{
"context" : "src",
"element" : "patient",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "patient",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "specimen",
"source" : [
{
"context" : "src",
"element" : "specimen",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "specimen",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "device",
"source" : [
{
"context" : "src",
"element" : "device",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "device",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "performer",
"source" : [
{
"context" : "src",
"element" : "performer",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "performer",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "quantity",
"source" : [
{
"context" : "src",
"element" : "quantity",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "quantity",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "referenceSeq",
"source" : [
{
"context" : "src",
"element" : "referenceSeq",
"variable" : "vs0"
}
],
"target" : [
{
"context" : "tgt",
"element" : "referenceSeq",
"variable" : "vt0"
}
],
"dependent" : [
{
"name" : "referenceSeq",
"parameter" : [
{
"valueId" : "vs0"
},
{
"valueId" : "vt0"
}
]
}
]
},
{
"name" : "variant",
"source" : [
{
"context" : "src",
"element" : "variant",
"variable" : "vs0"
}
],
"target" : [
{
"context" : "tgt",
"element" : "variant",
"variable" : "vt0"
}
],
"dependent" : [
{
"name" : "variant",
"parameter" : [
{
"valueId" : "vs0"
},
{
"valueId" : "vt0"
}
]
}
]
},
{
"name" : "observedSeq",
"source" : [
{
"context" : "src",
"element" : "observedSeq",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "observedSeq",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "quality",
"source" : [
{
"context" : "src",
"element" : "quality",
"variable" : "vs0"
}
],
"target" : [
{
"context" : "tgt",
"element" : "quality",
"variable" : "vt0"
}
],
"dependent" : [
{
"name" : "quality",
"parameter" : [
{
"valueId" : "vs0"
},
{
"valueId" : "vt0"
}
]
}
]
},
{
"name" : "readCoverage",
"source" : [
{
"context" : "src",
"element" : "readCoverage",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "readCoverage",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "repository",
"source" : [
{
"context" : "src",
"element" : "repository",
"variable" : "vs0"
}
],
"target" : [
{
"context" : "tgt",
"element" : "repository",
"variable" : "vt0"
}
],
"dependent" : [
{
"name" : "repository",
"parameter" : [
{
"valueId" : "vs0"
},
{
"valueId" : "vt0"
}
]
}
]
},
{
"name" : "pointer",
"source" : [
{
"context" : "src",
"element" : "pointer",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "pointer",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
}
]
},
{
"name" : "referenceSeq",
"extends" : "BackboneElement",
"input" : [
{
"name" : "src",
"mode" : "source"
},
{
"name" : "tgt",
"mode" : "target"
}
],
"rule" : [
{
"name" : "chromosome",
"source" : [
{
"context" : "src",
"element" : "chromosome",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "chromosome",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "genomeBuild",
"source" : [
{
"context" : "src",
"element" : "genomeBuild",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "genomeBuild",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "referenceSeqId",
"source" : [
{
"context" : "src",
"element" : "referenceSeqId",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "referenceSeqId",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "referenceSeqPointer",
"source" : [
{
"context" : "src",
"element" : "referenceSeqPointer",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "referenceSeqPointer",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "referenceSeqString",
"source" : [
{
"context" : "src",
"element" : "referenceSeqString",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "referenceSeqString",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "strand",
"source" : [
{
"context" : "src",
"element" : "strand",
"condition" : "value = 'watson'"
}
],
"target" : [
{
"context" : "tgt",
"element" : "strand",
"transform" : "copy",
"parameter" : [
{
"valueString" : "1"
}
]
}
]
},
{
"name" : "1",
"source" : [
{
"context" : "src",
"element" : "strand",
"variable" : "vvv",
"condition" : "value = 'crick'"
}
],
"target" : [
{
"context" : "tgt",
"element" : "strand",
"variable" : "vvv",
"transform" : "create"
}
]
},
{
"name" : "windowStart",
"source" : [
{
"context" : "src",
"element" : "windowStart",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "windowStart",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "windowEnd",
"source" : [
{
"context" : "src",
"element" : "windowEnd",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "windowEnd",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
}
]
},
{
"name" : "variant",
"extends" : "BackboneElement",
"input" : [
{
"name" : "src",
"mode" : "source"
},
{
"name" : "tgt",
"mode" : "target"
}
],
"rule" : [
{
"name" : "start",
"source" : [
{
"context" : "src",
"element" : "start",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "start",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "end",
"source" : [
{
"context" : "src",
"element" : "end",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "end",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "observedAllele",
"source" : [
{
"context" : "src",
"element" : "observedAllele",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "observedAllele",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "referenceAllele",
"source" : [
{
"context" : "src",
"element" : "referenceAllele",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "referenceAllele",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "cigar",
"source" : [
{
"context" : "src",
"element" : "cigar",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "cigar",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "variantPointer",
"source" : [
{
"context" : "src",
"element" : "variantPointer",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "variantPointer",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
}
]
},
{
"name" : "quality",
"extends" : "BackboneElement",
"input" : [
{
"name" : "src",
"mode" : "source"
},
{
"name" : "tgt",
"mode" : "target"
}
],
"rule" : [
{
"name" : "type",
"source" : [
{
"context" : "src",
"element" : "type",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "type",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "standardSequence",
"source" : [
{
"context" : "src",
"element" : "standardSequence",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "standardSequence",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "start",
"source" : [
{
"context" : "src",
"element" : "start",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "start",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "end",
"source" : [
{
"context" : "src",
"element" : "end",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "end",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "score",
"source" : [
{
"context" : "src",
"element" : "score",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "score",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "method",
"source" : [
{
"context" : "src",
"element" : "method",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "method",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "truthTP",
"source" : [
{
"context" : "src",
"element" : "truthTP",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "truthTP",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "queryTP",
"source" : [
{
"context" : "src",
"element" : "queryTP",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "queryTP",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "truthFN",
"source" : [
{
"context" : "src",
"element" : "truthFN",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "truthFN",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "queryFP",
"source" : [
{
"context" : "src",
"element" : "queryFP",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "queryFP",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "gtFP",
"source" : [
{
"context" : "src",
"element" : "gtFP",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "gtFP",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "precision",
"source" : [
{
"context" : "src",
"element" : "precision",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "precision",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "recall",
"source" : [
{
"context" : "src",
"element" : "recall",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "recall",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "fScore",
"source" : [
{
"context" : "src",
"element" : "fScore",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "fScore",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
}
]
},
{
"name" : "repository",
"extends" : "BackboneElement",
"input" : [
{
"name" : "src",
"mode" : "source"
},
{
"name" : "tgt",
"mode" : "target"
}
],
"rule" : [
{
"name" : "type",
"source" : [
{
"context" : "src",
"element" : "type",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "type",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "url",
"source" : [
{
"context" : "src",
"element" : "url",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "url",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "name",
"source" : [
{
"context" : "src",
"element" : "name",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "name",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "datasetId",
"source" : [
{
"context" : "src",
"element" : "datasetId",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "datasetId",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "variantsetId",
"source" : [
{
"context" : "src",
"element" : "variantsetId",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "variantsetId",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "readsetId",
"source" : [
{
"context" : "src",
"element" : "readsetId",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "readsetId",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
}
]
}
]
}
XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.